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View bacteriocin : Cinnamycin (Lanthiopeptin) |
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| [Ref. 3] | View abstract | Export citation | PROTEIN SEQUENCE OF 60-78. MEDLINE=89291558;PubMed=2544544; Naruse N., Tenmyo O., Tomita K., Konishi M., Miyaki T., Kawaguchi H., Fukase K., Wakamiya T., Shiba T. "Lanthiopeptin, a new peptide antibiotic. Production, isolation and properties of lanthiopeptin.", J. Antibiot. 42:837-845(1989). |
| [Ref. 4] | View abstract | Export citation | PROTEIN STRUCTURE. PubMed=8882709; Hosoda, K., Ohya, M., Kohno, T., Maeda, T., Endo, S., Wakamatsu, K. "Structure determination of an immunopotentiator peptide, cinnamycin, complexed with lysophosphatidylethanolamine by 1H-NMR1", J.Biochem.(Tokyo) (1996) 119: 226-230. |
| Sequence |
........10 ........20 | | CRQSCSFGPF TFVCDGNTK |
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| Wheel representation |
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| Structure |
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| Formula |
C89
H133
N25
O28
S3
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| Absent amino acids |
AEHILMWY |
| Common amino acids |
CF |
| Mass (Da) |
2115.66 |
| Net charge |
+1 |
| Isoelectric point |
8.05 |
| Basic residues |
2 |
| Acidic residues |
1 |
| Hydrophobic residues |
4 |
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| Polar residues |
10 |
| Aliphatic residues |
1 |
| Tiny residues |
4 |
| Boman Index |
-34.61 |
| Hydropathy Index |
-0.22 |
| Aliphatic Index |
15.26 |
| Instability Index |
77.73 (unstable)
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| Half Life |
Mammalian : 1.2 hour
Yeast : >20 hour
E. coli : >10 hour |
| Extinction Coefficient |
125 M-1 cm-1 |
| Absorbance 280nm |
6.94 |
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Red solid plot : values according to the hydrophobicity scale of Kyte and Doolittle (reference paper).
Yellow dashed plot : Experimentally determined hydrophobicity scale for proteins at membrane interfaces(reference paper).
Green dotted-dashed plot : prediction of transmembrane helices (reference paper). In this scale (unlike the others), more negative values reflect greater hydrophobicity.
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