View bacteriocin : Divergicin M35

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[Ref. 1] | View abstract | Export citation
PROTEIN SEQUENCE, STRAIN=M35
PubMed=15541799;
Tahiri I, Desbiens M, Benech R, Kheadr E, Lacroix C, Thibault S, Ouellet D, Fliss I.
"Purification, characterization and amino acid sequencing of divergicin M35: a novel class IIa bacteriocin produced by Carnobacterium divergens M35.", Int J Food Microbiol. 97(2):123-36(2004).

[Ref. 2] | View abstract | Export citation
MODE OF ACTION, STRAIN=M35
PubMed=16405682;
Naghmouchi K, Drider D, Kheadr E, Lacroix C, Prevost H, Fliss I.
"Multiple characterizations of Listeria monocytogenes sensitive and insensitive variants to divergicin M35, a new pediocin-like bacteriocin.", J Appl Microbiol. 2006;100(1):29-39.

[Ref. 3] | View abstract | Export citation
MODE OF ACTION, STRAIN=M35
PubMed=17578415;DOI=10.1111/j.1365-2672.2006.03206.x
Naghmouchi K., Drider D., Fliss I.
"Action of divergicin M35, a class IIa bacteriocin, on liposomes and Listeria.", Journal of Applied Microbiology 102(6):1508-17

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Sequence
 ........10 ........20 ........30 ........40 ........50 
          |          |          |          |          | 
 TKYYGNGVYC NSKKCWVDWG TAQGCIDVVI GQLGGGIPGK GKC
Wheel representation
Composition
Formula C200 H308 N54 O58 S4
Absent amino acids EFHMR
Common amino acids G
Mass (Da) 4543.96
Net charge +3
Isoelectric point 8.65
Basic residues 5
Acidic residues 2
Hydrophobic residues 11
Polar residues 22
Aliphatic residues 8
Tiny residues 12
Boman Index -21.68
Hydropathy Index -0.19
Aliphatic Index 65.58
Instability Index -3.74 (stable)
Half Life Mammalian : 7.2 hour
Yeast : >20 hour
E. coli : >10 hour
Extinction Coefficient 15720 M-1 cm-1
Absorbance 280nm 374.29
Red solid plot : values according to the hydrophobicity scale of Kyte and Doolittle (reference paper).


Yellow dashed plot : Experimentally determined hydrophobicity scale for proteins at membrane interfaces(reference paper).


Green dotted-dashed plot : prediction of transmembrane helices (reference paper). In this scale (unlike the others), more negative values reflect greater hydrophobicity.

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