View bacteriocin : Enterocin-HF Bookmark and Share

[Ref. 1]
PROTEIN SEQUENCE, FUNCTION, AND MASS SPECTROMETRY.STRAIN=HS, and TA29;

Almeida T., Brandao A., Campanero C., Igrejas G., Torres C., Herandez P.E., Poeta P., Cintas L.M., Herranz C.
"Amino acid sequence of Enterocin-HF, a new pediocin-like bacteriocinproduced by E. faecium HS and E. faecium TA29 isolated from humans andfish (thin-lipped grey mullet; Liza ramada) in Portugal.", Submitted (JAN-2009) to UniProtK

Loading...
End Note
Reference Manager
BibTeX
Sequence
........10........20........30........40........50
| | | | |
KYYGNGVSCNKKGCSVDWGKAIGIIGNNAAANLTTGGKAAWAC
Wheel representation
Composition
AA N° %

AA N° %

AA N° %
Ala 7 16.28%

Ile 3 6.98%

Arg 0 .00%
Cys 3 6.98%

Lys 5 11.63%

Ser 2 4.65%
Asp 1 2.33%

Leu 1 2.33%

Thr 2 4.65%
Glu 0 .00%

Met 0 .00%

Val 2 4.65%
Phe 0 .00%

Asn 5 11.63%

Trp 2 4.65%
Gly 8 18.60%

Pro 0 .00%

Tyr 2 4.65%
His 0 .00%

Gln 0 .00%
Total 43
Formula C188 H295 N55 O57 S3
Absent amino acids EFHMPQR
Common amino acids G
Mass (Da) 4352.68
Net charge +4
Isoelectric point 9.37
Basic residues 5
Acidic residues 1
Hydrophobic residues 15
Polar residues 22
Aliphatic residues 6
Tiny residues 17
Boman Index -25.44
Hydropathy Index -0.12
Aliphatic Index 66.05
Instability Index 10.12 (stable)
Half Life Mammalian : 1.3 hour
Yeast : 3 min
E. coli : 2 min
Extinction Coefficient 13980 M-1 cm-1
Absorbance 280nm 335.83
Red solid plot : values according to the hydrophobicity scale of Kyte and Doolittle (reference paper).


Yellow dashed plot : Experimentally determined hydrophobicity scale for proteins at membrane interfaces(reference paper).


Green dotted-dashed plot : prediction of transmembrane helices (reference paper). In this scale (unlike the others), more negative values reflect greater hydrophobicity.

Users comments for Enterocin-HF

No comments found

Login or register to submit a comment for Enterocin-HF.