BACTIBASE Database

Useful links General Databases

UniProt : The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data.

The Protein Data Bank (PDB) : A single worldwide repository for the processing and distribution of 3-D biological macromolecular structure data.

Antimicrobial Peptide Databases

AMSDb : Antimicrobial Sequences Database

APD : The Antimicrobial Peptide Database

CAMP : Collection of Anti-Microbial Peptides

APPDb : Antimicrobial Peptide and Protein database (presently inactive).

AMPer : A database and discovery tool for antimicrobial peptides, based on hidden Markov models and the SwissProt databank.

ANTIMIC : A Singapore Database of antimicrobial peptides (presently inactive).

BAGEL : A genome mining tool for putative bacteriocin gene clusters detection.

PhytAMP : A database dedicated to plant antimicrobial peptides

Peptaibols : Peptaibol Database.

Defensins : Defensins Knowledgebase.

PenBase : The Shrimp Penaeidin Database.

RAPD : A database of recombinantly-produced antimicrobial peptides.

SAPD : A database for Synthetic Antibiotic Peptides

Tools

Modeller : is used for homology or comparative modeling of protein three-dimensional structures.

PyMOL : is a molecular viewer, render tool, and 3D molecular editor.

FigTree : FigTree is designed as a graphical viewer of phylogenetic trees and as a program for producing publication-ready figures.

TreeView : TreeView is a simple program for displaying phylogenies on Apple Macintosh and Windows PCs.

SciDBMaker : SciDBMaker is stand-alone software that allows the extraction of protein data from the Swiss-Prot database, sequence analysis comprising physicochemical profile calculations, homologous sequences search, multiple sequence alignments and the building of new and more specialized databases.