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  • Similarity Search
  • Multiple Alignment
  • Physicochemical Profile
  • Hidden Markov Models
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Search for similar sequences (Blast, Fasta or Smith-Waterman Search)
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Multiple sequences alignment (ClustalW, MUSCLE or T-Coffee)
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Analyze a sequence (Physicochemical profile)
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 SciDBMaker : SciDBMaker is stand-alone software that allows the extraction of protein data from the Swiss-Prot database, sequence analysis comprising physicochemical profile calculations, homologous sequences search, multiple sequence alignments and the building of new and more specialized databases.
Search sequences against BACTIBASE HMM database (HMMER)
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Classification scheme

 

NOTE: Classification problematics

The Classification of bacteriocins in general has been problematic (Marco et al., 2000) and the present criteria chosen for classification seem incoherent and inadequate (Dzung et al., 2002). Some bacteriocins were classified in different classes according this classification. Hidden Markov Models integrated can be used automatically to determine the most probably appurtenance of the different peptides of our data base in identified classes cited. We note that we are developing an enhanced bacteriocins classification and the project will be available soon.

Bacteriocin structure prediction (Only for academic users: Modeller)
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Consider my sequence as cyclic
By checking this box, I assert that I am part of an academic institution (not a government research lab such as the NIH, or a commercial entity) and agree to the terms of the Modeller license.
 

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